COMBINE - de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology

Dates: Sunday, October 27th, 2018
Location: Lyon, France

This tutorial workshop is a satellite of the 19th International Conference on Systems Biology (ICSB). Participants will learn how to set up computer models of biological systems (e.g. metabolic or signalling networks) using experimental kinetic data and how to simulate them in different systems biology platforms. Hands-on sessions, lectures and software demonstrations will be included, providing attendees with the necessary skills to access experimental kinetics data from available resources, to assemble computer models with these data, and finally to simulate the generated models using simulation tools. Also handling and exchange of biological models based on existing community standards will be dem onstrated along with the basic principles of the underlying standard formats

de.NBI Summer School 2018


SABIO-RK and SEEK at de.NBI Summer School 2018: 'Riding the Data Life Cycle'
Date: 03-09-2018 to 07-09-2018
Location: Braunschweig, Germany

Learning goals:
The goal of this de.NBI summer school is to raise awareness for the importance of proper research data management in general but will also provide a practical toolbox for the acquisition, curation, documentation, archiving and publication of research data following the FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. Furthermore, a practical training on accessing the data for re-use and integration are part of the learning goals.

ELIXIR All Hands 2018


ELIXIR - de.NBI meeting 2018
Date: Mon 4 June 2018 to Thu 7 June 2018
Location: Berlin, Germany

Presentation of the main tools of the de.NBI SysBio node:
COPASI, CellNetAnalyzer, SABIO-RK and SEEK.

SABIO-RK at Biocuration 2018


Talk and poster presentation at the Biocuration Conference 2018
Date: 8-11th April, 2018
Location: Shanghai, China



Now SABIO-RK includes direct submissions of STRENDA DB data.

STRENDA DB is a validation and storage system for enzyme function data that incorporates the STRENDA Guidelines. STRENDA stands for "Standards for Reporting Enzymology Data".

The aim of the STRENDA Guidelines is to improve the quality of data published in the scientific literature and to enable researchers to compare, evaluate, interpret and reproduce experimental research results published in the literature and databases.

Currently more than 50 international biochemistry journals already included the STRENDA Guidelines in their Instructions for Authors.

Details about STRENDA DB are published here.

SABIO-RK in de.NBI course


de.NBI course 'Tools for systems biology modeling and data management'
Date: April 24th-26th, 2018
Location: Magdeburg, Germany
Website: Tools for systems biology modeling and data management